Publications

Submitted

  • on Bayesian Biclustering.
  • with Masoud and Ioana on Convergence in MCMC Clustering.
  • with Anthony on Empirical Bayesian Classification and Clustering.

    • Manuscript Prepared

  • with Reza, Greet, and Ahmad on A Permutation Procedure for Testing Variance Components in Mixed Effects Models.

    • Working

  • with Dave on Clustering 3D Objects.
  • with Dave and Masoud on 2D Clustering of Cells.
  • with Masoud and Ioana on Convergence Criteria for Bayesian Clustering with Intractable Marginals.
  • with Ryan and Noah on L1-Penalized Biclustering.

    • Published

  • Partovi Nia, V. and Davison A. (2012) High-Dimensional Bayesian Clustering with Variable Selection: The R Package bclust, Jounral of Statistical Software [PDF]. We show how Bayesian clustering with variable selection can be done using our package bclust. The bclust package implements a new Bayesian framework for variable selection in high-dimensional clustering.
  • Partovi Nia, V. and Stephens D. A. (2011) Dendrogram Representation of Stochastic Clustering, Probability: Interpretation, Theory and Applications, Nova Publishers [PDF], buy the book [HERE]. We show how a hierarchical tree can be extracted from random samples of groupings. We also explain the ideas using one of our R packages published on CRAN.
  • Messerli, G., Partovi Nia, V., Trevisan, M., Kolbe, A., Schauer, N., Geigenberger, P., Chen, J., Davison, A. C., Fernie, A. R. and Zeeman, S. C. (2007) Rapid Classification of Phenotypic Mutants of Arabidopsis Via Metabolite Fingerprinting, Plant Physiology, impact factor 7.01, Vol. 143, 1484-1492 [PDF] We show metabolite fingerprinting is an effective method of classification forward genetic mutants of Arbidopsis Thaliana. .
  • Partovi Nia, V. (2009) Fast High-Dimensional Bayesian Classification and Clustering, Ecole Polytechnique Fédérale de Lausanne, Ph.D. Thesis [PDF].
  • Parchami, A., Mashinchi, M., and Partovi Nia, V. (2008) A Consistent Confidence Interval for Fuzzy Capability Index, Applied and Computational Mathematics, Vol. 7, no. 1, 119-125 [PDF].
  • Partovi Nia, V. (2006) Gauss-Hermite Quadratures: Numerical or Statistical Method? The 8th. Iranian Statistical Conference Proceedings (invited and refereed papers), 209-215 [PDF].

    • Technical Reports

    Contributed conference presentations

  • Partovi Nia, V. and Davison, A. C. (2008) Rapid Variable Selection for Bayesian Clustering presented in EPFL research Day, [PDF].
  • Davison, A. C. and Partovi Nia, V. (2007) Fast High-Dimensional Classification and Clustering presented in Statistical Methods in Bioinformatics in Munich, [PDF].
  • Partovi Nia, V. and Davison, A. C. (2006) Bayesian Metabolite Fingerprinting presented in International Biometric Conference in Montreal, [PDF].

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